All Classes
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Class Description Assay Class to represent an assay in the ISA hierarchy.Characteristic Comment Class representing aCommentthat can be assigned to anInvestigation,Study,Assay,DataFile,Factor,OntologyAnnotation,Person,Process,Protocol,Publication,Sample, orSource.Commentable Interface, which allows to enrich a component with a list ofComments.CommentCollection Class to wrap the functions to handle theComments of a component.DataFile Factor FactorValue GeneralValidation Class for validating the structure of the general ISA modelInvestigation Class to represent an Investigation in the ISA Context, which contains the overall information about the goals and means of the experiment.InvestigationAttribute List of constant attributes for theInvestigationfiles.InvestigationConfigEnum Interface for providing functions for the specific investigation fields of an ISA configurationMaterial MIAPPEv1x1 MIAPPEv1.1 validation class, modeled after https://github.com/MIAPPE/ISA-Tab-for-plant-phenotyping at commit 0e1a29d from October 2019MIAPPEv1x1.AssayFile MIAPPEv1x1.InvestigationFile MIAPPEv1x1.StudyFile MissingFieldException Ontology Class to represent an ontologyOntologyAnnotation Class representing aOntologybased term.ParameterValue Person Process Props Class to collect static general properties for the isa4J APIProtocol Class to represent a protocol/process for aStudy, which contains severalParameterValueProtocolComponent ProtocolParameter Publication RedundantItemException Exception to handling non-unique parameter or attribute namesSample Source StringUtil Utility class with functions to handle severalStringtasksStudy Class to represent a study in context of the ISA hierarchy.StudyAssayAttribute StudyOrAssayTableObject Symbol Constants for frequently used symbols String symbols and literalsWideTableConfigEnum WideTableFile